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Extended ID MD22_AT_AT_CG_CG_ChmielaVassilev-GalindoUnkeKabyldaSaucedaTkatchenkoMuller__DS_rx1ei5q0x9gy_0
Description Dataset containing MD trajectories of AT-AT-CG-CG DNA base pairs from the MD22 benchmark set. MD22 represents a collection of datasets in a benchmark that can be considered an updated version of the MD17 benchmark datasets, including more challenges with respect to system size, flexibility and degree of non-locality. The datasets in MD22 include MD trajectories of the protein Ac-Ala3-NHMe; the lipid DHA (docosahexaenoic acid); the carbohydrate stachyose; nucleic acids AT-AT and AT-AT-CG-CG; and the buckyball catcher and double-walled nanotube supramolecules. Each of these is included here in a separate dataset, as represented on Calculations were performed using FHI-aims and i-Pi software at the DFT-PBE+MBD level of theory. Trajectories were sampled at temperatures between 400-500 K at 1 fs resolution.
Authors Stefan Chmiela
Valentin Vassilev-Galindo
Oliver T. Unke
Adil Kabylda
Huziel E. Sauceda
Alexandre Tkatchenko
Klaus-Robert Müller
DOI 10.60732/a87c6d4c

Cite as: Chmiela, S., Vassilev-Galindo, V., Unke, O. T., Kabylda, A., Sauceda, H. E., Tkatchenko, A., and Müller, K. "MD22 AT AT CG CG." ColabFit, 2023.
For other citation formats, see the DataCite Fabrica page for this dataset.
Elements C (32.2%)
H (35.59%)
N (25.42%)
O (6.78%)
Number of Data Objects 10,153
Number of Configurations 10,153
Number of Atoms 1,198,054
Configuration Sets by Name (None)
Configuration Sets by ID (None)
Data Objects Too many to display
ColabFit ID DS_rx1ei5q0x9gy_0
Files colabfitspec.json

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