Dataset

MD22_Ac_Ala3_NHMe




Species content of dataset


Name :
MD22_Ac_Ala3_NHMe
Authors :
Stefan Chmiela, Valentin Vassilev-Galindo, Oliver T. Unke, Adil Kabylda, Huziel E. Sauceda, Alexandre Tkatchenko, Klaus-Robert Müller
Description :
Dataset containing MD trajectories of the 42-atom tetrapeptide Ac-Ala3-NHMe from the MD22 benchmark set. MD22 represents a collection of datasets in a benchmark that can be considered an updated version of the MD17 benchmark datasets, including more challenges with respect to system size, flexibility and degree of non-locality. The datasets in MD22 include MD trajectories of the protein Ac-Ala3-NHMe; the lipid DHA (docosahexaenoic acid); the carbohydrate stachyose; nucleic acids AT-AT and AT-AT-CG-CG; and the buckyball catcher and double-walled nanotube supramolecules. Each of these is included here in a separate dataset, as represented on sgdml.org. Calculations were performed using FHI-aims and i-Pi software at the DFT-PBE+MBD level of theory. Trajectories were sampled at temperatures between 400-500 K at 1 fs resolution.
Cite As :
Chmiela, S., Vassilev-Galindo, V., Unke, O. T., Kabylda, A., Sauceda, H. E., Tkatchenko, A., and Müller, K. "MD22 Ac Ala3 NHMe." ColabFit, 2023. https://doi.org/10.60732/4bc7295f.
ColabFit ID :
Date Added :
2023-10-07
License :
CC0-1.0
Downloads :
83
Num. Configurations :
85,099
Num. Atoms :
3,574,158
Calculated Property Types :
atomic_forces energy
Elements :
C (28.57%) H (52.38%) N (9.52%) O (9.52%)
Methods :
DFT-PBE+MBE
Software :
FHI-aims
Data Source Link :
Spec File :
Configuration Sets by Name :
Configuration Sets by ID :
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